It won't cause any problem for the bike shop. nearly all hub-motors need at least a slight off-set of the rim.
I true the wheel by using a cable-tie fixed to the chain-stay as a point. No need to take the wheel off. Just turn the bike upside down and sit behind it. I would say about 20 minutes to true it.
That's how a practical guy would do it. A jobsworth would want to take the wheel off and put it in his fancy jig, which it will most likely not fit.
One time, a guy bought a massive DD hub-motor (3KW) into the shop for truing. It wouldn't fit in the jig and he didn't bring the bike, so I needed a pointer. I screwed a couple of U-brackets to the ends of a pair of 2 x 2 lengths of wood to hold the axle, put them in a vice and banged a big nail through as a pointer. the only problem was that I had no idea whether there needed to be an off-set, so I set it to the average of where it was. After he took the wheel, he never came back, but that doesn't necessarily mean that he was happy.