I'm following this thread with a lot of interest, because I considered buying the S12S over the S06S for a different reason.
As it's not much more expensive from BMS, (especially when you factor in the shipping), I was thinking it would be "heavier duty" than the S06S, and far less stressed even when carrying the maximum amps that a 350w motor could draw, (about 15 amps, I believe).
I thought there was a danger of frying the motor more easily though, if it was ever overloaded (eg, slow speed, steep hill), because the shunt could pass so much more current than a correctly matched controller ?
Isn't it important to reduce the shunt resitance, to minimize the risk ?
I'm a fan of the sine wave controllers now. After hearing about them from Dave, I replaced the KU65 on my 250w front motor "kit" bike last year with an S06S, and it was much smoother and quieter, with a much better panel, more adjustable PAS, and throttle start.