You'll probably have to file the drop-outs a bit. I normally file them deeper too.
When you put the motor axle in the dropouts, you'll see that it's no longer central because it has a larger diameter plus, it's the wrong profile at the top. This means that the first washer doesn't sit properly in the dimple. If you tighten the nuts like that, the drop-outs can pop. It's very important that the washer doesn't touch the edge of the dimple. You can either centralise the axle or file the washers, or both.